PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001734-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 1190aa    MW: 133282 Da    PI: 9.1398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001734-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-085086341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W+ eE  ++++a +++G++ Wk++a  +  +R+ +++ 
    NNU_001734-RA 50 QWSREELIRFYEAYRKYGKD-WKKVAGIVR-NRSVEMVE 86
                     6*****************99.*********.***98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-104594IPR009057Homeodomain-like
SMARTSM007176.0E-44795IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-45087IPR009057Homeodomain-like
PfamPF002494.0E-75090IPR001005SANT/Myb domain
CDDcd001673.38E-55185No hitNo description
PfamPF065844.3E-33666766IPR033471DIRP domain
SMARTSM011354.8E-58666767IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1190 aa     Download sequence    Send to blast
MIVYMAPPRK SRSVNKRFPN VNEESPDKDR GNANKSRQRK RTLSDMLGPQ WSREELIRFY  60
EAYRKYGKDW KKVAGIVRNR SVEMVEALYN MNRAYLSLPE GTASVVGLIA MMTDHYNVLE  120
GNDSERESND VSETSRKPQK RGRGKVRDNV SKGSDRYLSD LLHSQSASSY GCLSLLKKRR  180
SGGSRPWAVG KRTPRFPVSH SYDKDDREKH VSSNKRGMKP EIDANDDEVA HEVALALAEA  240
SQRGGSPQVS QTPNRRESMR PSPVQNGERM HAESEMASAR LTGTGMDEDG LEDSLGSKEA  300
ENGDFSRDTG NQIDAEGAGT IEVQWQQKKF HGRKLKVEEV ETNHFDDIRE ACSGTEEGIS  360
LGTVKGRAET EVTDAKIQRS SPQRPRKRSR QLFFGDESSA LDALQTLADL SLMMPSSTIE  420
NEPHVKFKKE KRALDVEKSS APEAMPLKEQ RDKSKMSATK EKGHQSVAAV GVVGAKSAKL  480
GRDSAVDDSV VTETKQRPFQ SSPKMRNRKR KSLATKSPKS EGHSDSYPSE LQKTEALMEE  540
GKKSVTKGKR TNQSTLLPKH GKLVKPSERS SSSTDQPRAE TESAVSMIQV QPADQVNLPT  600
KLRSRRKINL PKSFISKELK SSDSSGKDRP NMYSLSLHDK TLDFKEMLSH CLSSPMLRRW  660
CVFEWFYSAI DYPWFAKREF VEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRLSEQFLKE  720
EKEKLEQYRE SVRTHYAELR AGTREGLPTD LARPLSVGQR VIACHPKTRE IHDGSVLTVD  780
RNRCRVQFDR PELGVEFVMD IDCMPSNPME IMPEFLRKQT AEVEIFSENI NEPKMIRSKD  840
LKNGCCMKFA PCENMEIVDC SSQISSATYP MNTLLKQAKE DTINSISQAK AAASEMINAQ  900
HARYTQPFTL AQVQAKEADI RALSELTRAL DKKEALLLEL RHMNDEVLEN QKGGDNSLKD  960
SDPFKKQYAT VSSALLYLRQ RNTYHGNSPL PWMKPQPSSG GPIGPSSFDH TEFFPQESGS  1020
HVAEIVENSR LKAQAMVHTA IQVMFSLKEG KNAFARIGEA LDSANNRHFK ADSVASAIRD  1080
PANGGLTYQD HPTSCISEPT TTVPASDLKL NISDSNESQI PSELISSCVA TLLMIQTCTE  1140
RQYPPAEVAQ IIDSAVKSLQ PCCSQNLPIY GEIRKCMGIV RNQILALVPT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241815.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A061ENN10.0A0A061ENN1_THECC; Always early, putative isoform 1
STRINGGSMUA_Achr6P11910_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding